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The IRD bioinformatics servers provides informatics and bioinformatics resources to four IRD research units (Plant and Health units) and their partners :

 

 

 

 

Tools and databases:

 

Rice-BRCdb is an information system developed to manage information on rice genetic resources collected or produced by IRD or CIRAD institutes.
MoccaDB is a  comprehensive web resource for researchers working on Coffea genus, the Rubiaceae family or related species.
CMap is a web-based tool that allows users to view comparisons of genetic and physical maps. more
DiffExDB is a web-based tool for exploring gene expression (microarray or RNA-Seq experiments) and differential expression analyses.
The Xanthomonas utilities website offers a collection of bioinformatic tools developed for the analysis of Xanthomonas genomes.
 

VooIRD is a web-based toolkit used to medical questionnaire to HIV. This tool is based on Voozanno developped by Epiconcept

 
RegaDB is a HIV database and analysis management environnement. It is used to HIV analysis tool. It is developped by K.U. Leuven  
PINS-ARIM is web_based tool to arthropodes hematophages and soil nematodes collections management.  
P-TRAP software (for Panicle TRAits Phenotyping), is a free and open source applica- tion for high-throughput measurements of panicle architecture and seed-related traits.  
INsPECT (INtracellular ParasitE CounTer) is a free and open source software dedicated to automate quantification of Leishmania intracellular parasites based on fluorescent DNA images

 

 

Collaborative projects/developments (South Green Network)

 

 

Galaxy is a platform dedicated to Next Generation Sequencing (NGS) data analyses...

SNiPlay is a web-based tool for SNP and polymorphism analysis.
Coffee Genome Hub is a genomics and genetics resource for Coffee species.
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